YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58383070, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QMQVQPTKYV GLVADLMPNI RLMQASGHFL FRYVTGPILI RKVYSWWTLA MVLIQFFAIL  60
   61 GNLATNADDV NELTANTITT LFFTHSVTKF IYFAVNSENF YRTLAIWNQT NTHPLFAESD 120
  121 ARYHSIALAK MRKLLVLVMA TTVLSVVAWV TITFFGESVK TVLDKATNET YTVDIPRLPI 180
  181 KSWYPWNAMS GPAYIFSFIY QIYFLLFSMV QSNLADVMFC SWLLLACEQL QHLKGIMRSL 240
  241 MELSASLDTY RPNSSQLFRA ISAGSKSELI INEEKDPDVK DFDLSGIYSS KADWGAQFRA 300
  301 PSTLQTFDEN GRNGNPNGLT RKQEMMVRSA IKYWVERHKH VVRLVSAIGD TYGPALLLHM 360
  361 LTSTIKLTLL AYQATKIDGV NVYGLTVIGY LCYALAQVFL FCIFGNRLIE ESSSVMEAAY 420
  421 SCHWYDGSEE AKTFVQIVCQ QCQKAMTISG AKFFTVSLDL FASVLGAVVT YFMVLVQLK

Type	Start	End	Confidence
Cytoplasmic	1	42	0.83
Transmembrane Helix	43	65	0.85
Non-Cytoplasmic	66	72	0.82
Transmembrane Helix	73	93	0.79
Cytoplasmic	94	133	0.92
Transmembrane Helix	134	153	0.96
Non-Cytoplasmic	154	192	0.88
Transmembrane Helix	193	214	0.77
Cytoplasmic	215	340	0.96
Transmembrane Helix	341	362	0.72
Non-Cytoplasmic	363	381	0.70
Transmembrane Helix	382	405	0.84
Cytoplasmic	406	452	0.89
Transmembrane Helix	453	475	0.89
Non-Cytoplasmic	476	479	0.78