YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58382882, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.88
Transmembrane Helix	12	30	0.86
Non-Cytoplasmic	31	47	0.77
Transmembrane Helix	48	66	0.87
Cytoplasmic	67	74	0.85
Transmembrane Helix	75	93	0.94
Non-Cytoplasmic	94	98	0.77
Transmembrane Helix	99	117	0.88
Cytoplasmic	118	129	0.81
Transmembrane Helix	130	154	0.81
Non-Cytoplasmic	155	168	0.86
Transmembrane Helix	169	190	0.93
Cytoplasmic	191	198	0.77
Transmembrane Helix	199	221	0.90
Non-Cytoplasmic	222	235	0.85
Transmembrane Helix	236	258	0.87
Cytoplasmic	259	268	0.79
Transmembrane Helix	269	284	0.90
Non-Cytoplasmic	285	289	0.57
Transmembrane Helix	290	311	0.78
Cytoplasmic	312	331	0.71
Transmembrane Helix	332	352	0.93
Non-Cytoplasmic	353	366	0.83
Transmembrane Helix	367	390	0.87
Cytoplasmic	391	404	0.84
Transmembrane Helix	405	425	0.78
Non-Cytoplasmic	426	469	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKSYKTRPG ASDGWWLCVL VPACYAATVW RPYQRAYDQH LPRDYKRTVI VTFGLLLQSL  60
   61 VIRGTVQSRW NRRQAVLLTL AAVVPLSWGL FLVCLKENVA FGGVSALLPI ALYDKLYHTV 120
  121 LRTIPKSFSY GEACVVVQGF VAFAYCALLQ LPLATLLRPD AVYTEMQMIY CILQIGLVGI 180
  181 FLLACATYYC TWLRKTIPFW FALAVTTVLV ALCPIGKLPA ITRLVLFLVA DGQTMITTGM 240
  241 YLALLLLTVS FVMWQFNYGR RTTTATRKVF HLLIVLVYGP GLWYQCRLLY LASGLMLAVL 300
  301 IVLEMARLIQ LAPVASVLNT AVQLFIDEKD AGAIALTPIY LLVGCSLPLW LHPAPCDLTN 360
  361 SGGLQMLTLS AGVLSIGIGD TAASVAGYHF GRHKWHDRTN KSVEGTVASV LLQALAIGAL 420
  421 YHVGVIQLTV SRAAYAGIAV LVNALVESRT DQIDNLVLPL ITYLILVSS