YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55241869, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 THSAGMKYAT SPTPSRSNSS LLGMSSRTAS PLPAPANYRD CMSATTKSYK YLRRFIKFDQ  60
   61 MDFEYAMWQM VYLFIAPKKV YRNFNYRKQT KSQFARDDPA FLVLLVGCLC VTSIGFAWVL 120
  121 SLGFLQTILF TLYVVFVDCI FCGMIVATLL WVIANRYFRD RNSDFDMEWG YAFDVHLNAF 180
  181 FPPLILLHFI QLFFYHPLIS RDWFISTFIG NTIWLLALGY YIYITFLGYN VVPSLKNTRI 240
  241 ILVTLPLLCL FYVVTLIIGW NLSVSLMYYY HYRVL

Type	Start	End	Confidence
Cytoplasmic	1	99	0.94
Transmembrane Helix	100	122	0.92
Non-Cytoplasmic	123	129	0.81
Transmembrane Helix	130	153	0.93
Cytoplasmic	154	172	0.88
Transmembrane Helix	173	195	0.86
Non-Cytoplasmic	196	207	0.79
Transmembrane Helix	208	229	0.85
Cytoplasmic	230	239	0.80
Transmembrane Helix	240	262	0.89
Non-Cytoplasmic	263	275	0.86