YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60653549, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATATGVAEE RLLAALAYLQ CAVGCAVFAR NRQTNSVYGR HALPSHRLRV PARAAWVVQE  60
   61 LPSLALPLYQ YASESAPRLR SAPNCILLAM FLVHYGHRCL IYPFLMRGGK PMPLLACTMA 120
  121 IMFCTCNGYL QSRYLSHCAV YADDWVTDPR FLIGFGLWLT GMLINIHSDH ILRNLRKPGD 180
  181 TGYKIPRGGL FEYVTAANYF GEIMEWCGYA LASWSVQGAA FAFFTFCFLS GRAKEHHEWY 240
  241 LRKFEEYPKF RKIIIPFLFL

Type	Start	End	Confidence
Cytoplasmic	1	81	0.64
Transmembrane Helix	82	101	0.71
Non-Cytoplasmic	102	111	0.43
Transmembrane Helix	112	131	0.89
Cytoplasmic	132	150	0.49
Transmembrane Helix	151	171	0.81
Non-Cytoplasmic	172	209	0.62
Transmembrane Helix	210	231	0.85
Cytoplasmic	232	260	0.89