YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55239494, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKSSSCIKTE TGAKGFGCCY SASLSRSIMG ALGAIVLAII VRMVAANTME VHVNQPNSEV  60
   61 YHRQDMKRGE FDYGYHVQTV NNQFQHKVKG PDDVTYGCYG YVDPSNRKHL VYYVADRMGY 120
  121 RIIFPNRPTK IFTAKLADSL NKLDGAVKGK DYDEQVVEWN NLYMPESCFR LNEILEPAAS 180
  181 NQAPVQKVAP GSPTAPTTTH VTAQPAAPAL PQPTQYTIPT TPRTYVDLRG SGSEATDRHV 240
  241 GENGLGEQQP LYPGIYVQGS SNHQQGQERL DQGGYQ

Type	Start	End	Confidence
Cytoplasmic	1	26	0.63
Transmembrane Helix	27	46	0.73
Non-Cytoplasmic	47	276	0.88