YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58388785, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VKEQKTHTNK MAFEQNTLQV SGDGLDDFIL VFKELLSRYL DIGEDLNVPD DFTQSEMQTG  60
   61 MWWRHLAAGG IAGAVSRTCT APLDRLKVFL QVQASKQRIS DCLQYMLKEG GVRSLWRGNF 120
  121 INVLKIAPES AIKFAAYEQV KRLIRGNDKR QMTIYERFVA GACAGGVSQT AIYPMEVLKT 180
  181 RLALRKTGEY SSILDAASKI YRREGLRSFY RGYIPNMLGI IPYAGIDLAV YETLKKKYLS 240
  241 HHETEQPSFW LLLACGSASS TLGQVCSYPL ALVRTRLQAQ AVTIGPNPDG SVAVEPNMTN 300
  301 VFKRIIQTEG PVGLYRGITP NFIKVLPAVS ISYVVYEYTS RALGVNMT

Type	Start	End	Confidence
Non-Cytoplasmic	1	248	0.57
Transmembrane Helix	249	271	0.54
Cytoplasmic	272	348	0.51