YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58388455, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVTAVKFLNN PNVVRSAITK KQAFLRSKGL SEDEIQIACE RAGVFTTSPT QQTVISMGVE  60
   61 SSGGGNYAKP GYQIQPRQNF LTRMKDMLSS VALLSGLMYG VYLFYKKFIE PLLFRSKKKK 120
  121 TVTEQLTELN QTMTVKIDTL SAELSKIKAE LNQVNQTNAT VKELANFKGD LDSIKGLLLN 180
  181 RKQFAAPNLP VVPPSIPAWQ LRSQQHQPAS SEGEHDKHDD NDTGSGSGSS ENDVVLKNSD 240
  241 SSLEIM

Type	Start	End	Confidence
Cytoplasmic	1	86	0.67
Transmembrane Helix	87	105	0.74
Non-Cytoplasmic	106	246	0.91