YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58388364, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LRDCSVTLPL DILWLPKAAM RPFGPDSSHS DCVLVVGVSR PKLAALFLSV MLLSLFLTFH  60
   61 ILYDSAVYSI QVRGWAINKY SCILMTRFAF ASSQAATAIS ENKISILTNH IPNPPVINQP 120
  121 VVFPNRIHFP KTSRRLPQCL IIGVRKCGTR ALLEMLYLHP RIQKAAGEVH FFDRDENYLR 180
  181 GLEWYRKKMP HSFRGQITIE KSPSYFVTPE VPERVRAMNA SIKLLLIVRE PVTRAISDYT 240
  241 QLRSHAATAT LPQQQSLSST SPLSRSGGNT GKESIFNEPN RETRNDGKLL MRTGIIPPCP 300
  301 VTLPICTLPP PLRLLFEYLC LSFFSFYCAT RSRRVRCGSR ERSFEELALL PNGTVNEAYR 360
  361 PLAISQYHVH VHRWLEVFPR EQLLVVNGDQ LIDDPVSQLR RIEDFLGIEP RIGSNNFYFN 420
  421 ETKGFYCLRN ETGDKCLRET KGRKHPRVDP VVISKLRKFF VEHNQKFYEL VGEDLGWPEE 480
  481

Type	Start	End	Confidence
Cytoplasmic	1	42	0.82
Transmembrane Helix	43	63	0.89
Non-Cytoplasmic	64	480	0.85