YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58387706, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVNVLDEDH FAISAIVTVV MQIIFFLIAA IFQLDKLTDF AGGVNFIILA LLTFFLGQID  60
   61 RALKPYDSRQ LMVTVFVCLW GARLSGYLLY RIVKIGRDKQ FEDNRRNVIR FAVFWTFQAV 120
  121 WVFVVSLPVI IINSPRHSYP KAPKTMTTLD SAGTGMFITG LLAETYADLQ KFSFRQDPIN 180
  181 QGKFCNDGLW RMSRHPNYFG EIVIWWGIFV ISLNVIEGIE WVAILSPIFT TLIILFLSGI 240
  241 PVRERSADEK YRDDLEYRKY KACTSPLIPI PPAIYAEVPR ALKFILCCEF PLYDSLDKRR 300
  301 KDEGPFAMTT SISVAHSHS

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.64
Transmembrane Helix	11	32	0.94
Cytoplasmic	33	39	0.56
Transmembrane Helix	40	59	0.92
Non-Cytoplasmic	60	70	0.56
Transmembrane Helix	71	90	0.90
Cytoplasmic	91	110	0.66
Transmembrane Helix	111	132	0.93
Non-Cytoplasmic	133	147	0.64
Transmembrane Helix	148	166	0.64
Cytoplasmic	167	197	0.83
Transmembrane Helix	198	216	0.89
Non-Cytoplasmic	217	221	0.73
Transmembrane Helix	222	242	0.90
Cytoplasmic	243	319	0.95