YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55238369, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	204	0.96
Transmembrane Helix	205	227	0.87
Non-Cytoplasmic	228	252	0.90
Transmembrane Helix	253	274	0.90
Cytoplasmic	275	282	0.80
Transmembrane Helix	283	304	0.91
Non-Cytoplasmic	305	310	0.66
Transmembrane Helix	311	329	0.95
Cytoplasmic	330	338	0.85
Transmembrane Helix	339	359	0.94
Non-Cytoplasmic	360	366	0.73
Transmembrane Helix	367	385	0.94
Cytoplasmic	386	449	0.95
Transmembrane Helix	450	473	0.84
Non-Cytoplasmic	474	486	0.84
Transmembrane Helix	487	507	0.94
Cytoplasmic	508	513	0.93
Transmembrane Helix	514	536	0.91
Non-Cytoplasmic	537	547	0.91
Transmembrane Helix	548	571	0.88
Cytoplasmic	572	582	0.84
Transmembrane Helix	583	605	0.82
Non-Cytoplasmic	606	614	0.78
Transmembrane Helix	615	635	0.94
Cytoplasmic	636	670	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DENSFRKQRE HFQKHKSHST SEHKSQLIKE LRHLLATDNR RQFQGKKHVS LDVKSAKVLE  60
   61 QLLKASSSSD DFEGQRKEFQ ERKHKSLDAR HISFKFDKEP SPSSSDEDFE PSTSLLRIDA 120
  121 DITKPVIIDL KDLDSSDEED YISSRKHFQQ SKSMSTDSRK SIRFLEMEMG TKEENMRTAV 180
  181 PFVRQITEEG KPKLEVYRPT TNPIYIWTQV LAALSVSLGS MVVGFSSAYT SPALVSMKDR 240
  241 NITSFEVTDQ SGSWVGGIMP LAGLAGGILG GPMIEYLGRK NTILATATPF IISWLLIGCA 300
  301 THVAMVLVGR ALSGLCVGIA SLSLPVYLGE TVQPEVRGTL GLLPTAFGNI GILLCFVAGK 360
  361 YLDWSGLAFL GAALPIPFLL LMFLIPETPR WYVSRNREDR ARKALQWLRG RKADVEPELK 420
  421 GISKSHQDAE RHASSSAMLD LLNKANLKPL LISLGLMFFQ QLSGINAVIF YTVQIFQSAG 480
  481 STIDEKLCTI IVGVVNFIAT FIATVLIDRL GRKILLYISD VAMIITLMTL GTFFYMKNNG 540
  541 DDVSEIGWLP LAAFVVFVVG FSLGFGPIPW LMMGEILPGK IRGSAASVAT AFNWSCTFVV 600
  601 TKTFADITAS IGNHGAFWMF GSICIVGLLF VIVYVPETQG KSLEDIERKM MGRVRRMSSV 660
  661 ANIKPLSFNM