YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58390101, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNDGLSNEQ TEKVLQFQDI TGLDDMNVCR DILIRHQWDL EIAFQEHLNI REGRPSAYAT  60
   61 ESRAPAVIND RFLQHVFSSA RTSPSREPGG IAGVIGYMFN YMVNFWCSAF SSLLSSILGL 120
  121 FRDQESIPAD PLGDVLKFIQ TYNEKYPEHP VFYQGTYSQA LNDAKNELRF LLVYLHSEAT 180
  181 SEAVAFCRGA LSDPLVIEYV NRRMLFWGCD MASHEGKRVA TTVSVRTHPT LLIIGMRANK 240
  241 MIIMGRLEGD CSAEELIRRM DTVVNDNEVW LNQARQDRLE RDLTQTLRQQ QDEAYQRSLQ 300
  301 ADQEKQRRKQ QEREEAMRIQ AAIEAEQAAE QQRKEDIERL KLDLAQLVPS EPEAGAPDTI 360
  361 SIVFKLPSGL RLERRFRSTD TMRDIYHFIF CHPDAPDSFE ITTNFPKRVI ECSGDEPGQT 420
  421 LLLSGLKNRE VLFVADLEA

Type	Start	End	Confidence
Cytoplasmic	1	90	0.65
Transmembrane Helix	91	110	0.53
Non-Cytoplasmic	111	439	0.97