YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157014126, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCTGGLLITS RSLLWFLVTL IACMTLFGAI VLPKWLIGPE VIQIRNEEGN FTVLRHPSVG  60
   61 IYNRCKRMGR IEYNCGNFDL NGLLTDSTVF PVPWKFTMTL MCVGTMLLGL TLVSTLVTCC 120
  121 RLHSVYGFSM HKLLCIFQGV SAMLVLCGYL VYPLAWDAPR VRTLCGPDSE PYSPADCTLG 180
  181 VSIYLGAAGV LLTFLSTVLS RKAEAAYYSS KAQRRVIDGQ VLVCVM

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	32	0.96
Non-Cytoplasmic	33	96	0.95
Transmembrane Helix	97	120	0.89
Cytoplasmic	121	132	0.84
Transmembrane Helix	133	153	0.94
Non-Cytoplasmic	154	176	0.91
Transmembrane Helix	177	199	0.86
Cytoplasmic	200	226	0.96