YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58391445, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGKFVASCK EELEVRNCGF AHLPAEEFVK SQWQTRTKSI FFLLYRLALA IFFTGVVINS  60
   61 VVVAVERGEF SKYFIYLTHW GILLCMGTTI MGAILVMVWH FHPEYSEKVC NSDEMPNAFK 120
  121 IYWMLHNITL ILSVCITIIY WAILHNESMP VDPNNILIHA CNCVFMFLDL IIVAYPVRIW 180
  181 HVLQPITFGL VYCIFSVIYY AADGTDRFGR PYIYNVLDWN EPGKAMVTVV GTILLAMIVH 240
  241 MLMFAIYKLR VKIYLRYFNH KPIIPTNSTL QLQTGKCDGI SMVYGSDNKA FSISERY

Type	Start	End	Confidence
Cytoplasmic	1	41	0.99
Transmembrane Helix	42	64	0.93
Non-Cytoplasmic	65	78	0.86
Transmembrane Helix	79	101	0.94
Cytoplasmic	102	121	0.95
Transmembrane Helix	122	144	0.94
Non-Cytoplasmic	145	155	0.92
Transmembrane Helix	156	175	0.95
Cytoplasmic	176	181	0.77
Transmembrane Helix	182	202	0.91
Non-Cytoplasmic	203	224	0.93
Transmembrane Helix	225	247	0.92
Cytoplasmic	248	297	0.99