YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58394668, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELKEEWILP DVVYANPLLK RTLLGLRYYG ILLGQSQSYK KVHCFRGMVF TLSMVLFNCT  60
   61 QYIDLWQVWG SVSDMTANAA TTLLFSTTIF RIIFFYFHRA RFNSIIKAAH DGIERILKDG 120
  121 WTDEQSIVGS NVRYLKRLAV VFWSCALVTA NMMCVYSLVQ YLTYEEGPPD GTGTSAANIT 180
  181 RKGQPIPPTP ILRSWYPTAD GKDKHFLEIY LIQLYIMYVG QLIVPSWHMF MVTLMIYGRT 240
  241 ECSVLNHRLC FLERYHTAGK DDPTAPVNNA ERRSLMIDCI KRQASLVSFT RELEQLTRAA 300
  301 VFLDFVVFSV LLCALLFEAS MTPSGVQVFI DVCYITTMTT ILFLYYWHAN EIHACADRLS 360
  361 MSAYKSDWYR YDRGTNRMLQ IFILYSNRPL KMHAFFISMS LDTFLAILRA SYSYFTILKQ 420
  421 LTD

Type	Start	End	Confidence
Cytoplasmic	1	41	0.97
Transmembrane Helix	42	65	0.84
Non-Cytoplasmic	66	75	0.87
Transmembrane Helix	76	97	0.90
Cytoplasmic	98	138	0.97
Transmembrane Helix	139	159	0.94
Non-Cytoplasmic	160	214	0.92
Transmembrane Helix	215	238	0.81
Cytoplasmic	239	299	0.97
Transmembrane Helix	300	320	0.93
Non-Cytoplasmic	321	327	0.79
Transmembrane Helix	328	348	0.91
Cytoplasmic	349	391	0.93
Transmembrane Helix	392	412	0.74
Non-Cytoplasmic	413	423	0.68