YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58394363, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVNHCRREKG TNFFDISVWF VRRHFVLSAI CNRSAMKFLI LILGFVAAAN AISIFELVKE  60
   61 EWTAFKLQHR KKYDSETEER IRMKIYVQNK HKIAKHNQRY DLGQEKFRLR VNKYADLLHE 120
  121 EFVHTLNGFN RSVSGKGQLL RGELKPIEEP VTWIEPANVD VPTAMDWRTK GAVTQVKDQG 180
  181 HCGSCWSFSA TGALEGQHFR KTGKLVSLSE QNLVDCSQKY GNNGCNGGMM DFAFQYIKDN 240
  241 KGIDTEKSYP YEAIDDECHY NPKAVGATDK GFVDIPQGNE KALMKALATV GPVSVAIDAS 300
  301 HESFQFYSEG VYYEPQCDSE QLDHGVLAVG YGTTEDGEDY WLVKNSWGTT WGDQGYVKMA 360
  361 RNRDNHCGIA TTASYPLV

Type	Start	End	Confidence
Cytoplasmic	1	34	0.85
Transmembrane Helix	35	55	0.80
Non-Cytoplasmic	56	378	0.97