YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55233684, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSMGMAVGG MTSVSPQGGG FGATVLGSPG MGGMGAAMNS MSGNCLTSTP IGYSSMGSPI  60
   61 SNMGSCMGGN GMSTMAAMSG YSSVAGSREV LGDPSSPNSV ALQRARTEKP AATYRRNYTH 120
  121 AKPPYSYISL ITMAIQNNPH KMLTLAEIYQ FIMDLFPFYR QNQQRWQNSI RHSLSFNDCF 180
  181 VKVPRTPDKP GKGSFWTLHP DSGNMFENGC YLRRQKRFKD EKKEVLRSLH KSPAHGGSLD 240
  241 AVGSPDKKDP NEEHHHHHHH HSHSHHSHRT EHVSKLSAAV DTHGMLNSAH GKDADALAML 300
  301 HATADLCLAQ QSHSQHGGSH HPTHHHHHHP AHQQLQQEEL TAMVNRCHPS LLGEYHSMHL 360
  361 KQEPAGYTPS SHPFSITRLL PTESKADIKM YEMSQYAGYN GLSPLPNSHA AAAALGQDSY 420
  421 YHQSLGYHHA STGTTSL

Type	Start	End	Confidence
Cytoplasmic	1	17	0.29
Transmembrane Helix	18	38	0.59
Non-Cytoplasmic	39	437	0.77