YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PT505_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.92
Transmembrane Helix	9	28	0.94
Non-Cytoplasmic	29	41	0.75
Transmembrane Helix	42	63	0.92
Cytoplasmic	64	76	0.85
Transmembrane Helix	77	97	0.93
Non-Cytoplasmic	98	103	0.77
Transmembrane Helix	104	124	0.91
Cytoplasmic	125	130	0.87
Transmembrane Helix	131	149	0.94
Non-Cytoplasmic	150	153	0.79
Transmembrane Helix	154	173	0.79
Cytoplasmic	174	190	0.74
Transmembrane Helix	191	211	0.92
Non-Cytoplasmic	212	228	0.82
Transmembrane Helix	229	250	0.89
Cytoplasmic	251	256	0.72
Transmembrane Helix	257	278	0.76
Non-Cytoplasmic	279	283	0.68
Transmembrane Helix	284	301	0.84
Cytoplasmic	302	309	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMATNGRFF TIGLVASWYS SNIGVLLLNK YLLSNYGFKY PIFLTMCHMT ACSLLSYVAI  60
   61 AWLKMVPMQT IRSRVQFFKI AALSLVFCVS VVFGNISLRF LPVSFNQAIG ATTPFFTAVF 120
  121 AYLMTRKKEA WLTYFTLVPV VTGVVIASGG EPSFHLFGFL MCIAATAARA LKSVLQGILL 180
  181 SSEGEKLNSM NLLLYMAPIA VVLLLPATLI MEKNVVGITI ALARDDFRIV WYLLFNSALA 240
  241 YLVNLTNFLV TNHTSALTLQ VLGNAKGAVA VVVSILIFKN PVSVTGMLGY SLTVCGVILY 300
  301 SEAKKRNKN