YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	B3GTC_ARATH
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLFSHRFTT ASSSSPASPS YYNKPSSKTH KPNSSSSSYT SSRIHVAIIF FSLVSVFIGV  60
   61 AGTIFALSST GPASVYRCGG SKDTSRVVSA SRKLGGDGGN NGVVVERRKL LGFVGIQTGF 120
  121 DSGDRRTALR STWFPSDPDS LLRLEQATGL AFRFVIGKSK DAKKMAELEK EIKEYRDFVL 180
  181 LDTEEEYIRL PYKTLAFFKA AFKLFEADYY VKADDDIYLR PDRLATLLAN ERLHSQTYIG 240
  241 CMKKGPVITD PKLKWYEKQG NLIGNEYFLH AYGPIYVLSA EIVASLAAAR NGSLRMFNNE 300
  301 DVTIGSWMLA MDVHHEDNRA LCDPHCSPKS IAVWDIPKCS GLCDPESRLK ELHKTDMCSK 360
  361 SPTLPPDDID Q

Type	Start	End	Confidence
Cytoplasmic	1	43	0.93
Transmembrane Helix	44	67	0.89
Non-Cytoplasmic	68	371	0.93