YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52354659
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.67
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRLQCLVKE FRWWSFLSFM LFSLGCVTAS ELTFELPDNA KQCFYEDITQ GTKCTLEFQV  60
   61 ITGGHYDVDC RLEDPDGIVL YKEMKKQYDS FTFTATRNGT YKFCFSNEFS TFTHKTVYFD 120
  121 FQVGDDPPLF PNVNGATALT QMESSCVSIH EALKSVIDYQ THFRLREAQG RSRAEDLNSR 180
  181 VAYWSVGEAV ILLVVSIGQV FLLKSFFSDK RTTTTRVGS

Type	Start	End	Confidence
Signal Peptide	1	29	0.94
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	180	0.99
Transmembrane Helix	181	203	0.66
Cytoplasmic	204	219	0.66