YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51858973
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGEGRMAGLW RAYQRLLGAH PWKVQIVTAG SLVGVGDVIS QQLLERKGLK GHSIERTVKM  60
   61 MGIGFCFVGP VVGGWYKILD RIIPGSGKPV ALKKMLLDQV AFAPCFLGCF LSIASALNGL 120
  121 SGEQIWGKLK RDYKDALITN YYIWPAVQVA NFYFIPLYHR LAVVQFVAII WNSYLSWKAN 180
  181 KS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.80
Transmembrane Helix	21	40	0.78
Non-Cytoplasmic	41	57	0.71
Transmembrane Helix	58	79	0.89
Cytoplasmic	80	95	0.77
Transmembrane Helix	96	117	0.88
Non-Cytoplasmic	118	155	0.73
Transmembrane Helix	156	175	0.81
Cytoplasmic	176	182	0.78