YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S226A_XENLA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.78
Transmembrane Helix	16	37	0.79
Non-Cytoplasmic	38	141	0.88
Transmembrane Helix	142	161	0.88
Cytoplasmic	162	168	0.80
Transmembrane Helix	169	188	0.88
Non-Cytoplasmic	189	194	0.70
Transmembrane Helix	195	216	0.89
Cytoplasmic	217	225	0.77
Transmembrane Helix	226	247	0.91
Non-Cytoplasmic	248	252	0.82
Transmembrane Helix	253	273	0.93
Cytoplasmic	274	342	0.97
Transmembrane Helix	343	362	0.93
Non-Cytoplasmic	363	369	0.86
Transmembrane Helix	370	391	0.85
Cytoplasmic	392	400	0.80
Transmembrane Helix	401	421	0.91
Non-Cytoplasmic	422	431	0.73
Transmembrane Helix	432	451	0.93
Cytoplasmic	452	460	0.78
Transmembrane Helix	461	482	0.84
Non-Cytoplasmic	483	488	0.74
Transmembrane Helix	489	509	0.91
Cytoplasmic	510	558	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFAELLERT GGMGRFQITQ VALMCFPILL MASHNLLQNF SAAIPDHKCK ANDTWYQSNN  60
   61 TDRMGYVRLS APLDADGQPD RCLEYVEVQW MIAGTNRTWA NSSQLATRPC TEGWEYSKDE 120
  121 FNSTIITEWD LVCGHKNRRQ LAQSVYMGGV LVGAIILGGL SDRYGRRALL IWSYFQMAVS 180
  181 GLCSAFSPNY LSYCIFRFLT GMALSGIGLN TTALIVEWVP TRVRTITGTL AGFSYTVGQL 240
  241 LLAGLAYAMR DWRWLQLCVS LPFFIFFLYS WWFPESARWL VLSGKTERAV KEMKKVAKLN 300
  301 GKEEEGEKIT LESMRSDMIK ELACAKSSYT VIDLIRTSTI RRISCALSLV WFSTSFAYYG 360
  361 LAMDLQNFNV SIYLIQVIFG AVDFPAKIFS TTAMIYVGRK FTQLMSLILG GVVILANSFV 420
  421 PHEMQTVRTG MAVFGKGCLA ASFSCVFLYT TELYPTVIRQ SGLGLCSTMA RIGGIVAPLV 480
  481 KILGEYYPFL PLVIYGGAPI ISGLCVFFLP ETVNKPLPDT IEEVEKRIKA PKKENEMNEI 540
  541 VSLKKKEGMK ENPVNDVL