YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148222900, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGDSIGDS VHGKPSVVFR FFSRLGQIYQ SFLDKSTPYT AVRWVMTLGL SAIYMIRVYI  60
   61 LQGWYIVTYA MGIYHLNLFI AFLSPKVDPS LMEDSDEGPS LPTKQNEEFR PFIRRLPEFK 120
  121 FWHSATKGVV VAMGCTFFDA FNVPVFWPIL VMYFIMLFCI TMKRQIKHMI KYRYIPFTHG 180
  181 KRKYKGKEEP TSGKPFSS

Type	Start	End	Confidence
Cytoplasmic	1	39	0.87
Transmembrane Helix	40	61	0.69
Non-Cytoplasmic	62	64	0.49
Transmembrane Helix	65	83	0.76
Cytoplasmic	84	118	0.59
Transmembrane Helix	119	138	0.58
Non-Cytoplasmic	139	144	0.63
Transmembrane Helix	145	162	0.94
Cytoplasmic	163	198	0.96