YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147902103, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	44	0.90
Non-Cytoplasmic	45	145	0.94
Transmembrane Helix	146	168	0.87
Cytoplasmic	169	175	0.88
Transmembrane Helix	176	195	0.93
Non-Cytoplasmic	196	204	0.63
Transmembrane Helix	205	223	0.90
Cytoplasmic	224	234	0.74
Transmembrane Helix	235	256	0.92
Non-Cytoplasmic	257	260	0.82
Transmembrane Helix	261	280	0.89
Cytoplasmic	281	345	0.97
Transmembrane Helix	346	366	0.92
Non-Cytoplasmic	367	372	0.87
Transmembrane Helix	373	395	0.91
Cytoplasmic	396	401	0.93
Transmembrane Helix	402	421	0.96
Non-Cytoplasmic	422	427	0.74
Transmembrane Helix	428	450	0.79
Cytoplasmic	451	460	0.71
Transmembrane Helix	461	483	0.88
Non-Cytoplasmic	484	491	0.74
Transmembrane Helix	492	511	0.95
Cytoplasmic	512	550	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATFDDLLQH IGEFDAFQRR IFILMCFISA MFTPIYMGIV FLGFVPDYRC ASAGIPELSN  60
   61 KCGWTLQEEL NYTVLEANGS TDSFYLSQCY QYDVDWNSTS PSCTNSPLNI TSQPPITRCK 120
  121 DGWVYNTTGS SIVTEFNLVC GDSWKLDLIQ SCVNLGFFIG GFISGYIADR FGRKPFLMTS 180
  181 LLITAIFGIL MAFSPNYPLI VIFRFIQGLV SKGCWLSGYI LVAEFVGLEH RRTVGILYQV 240
  241 AFTVGLLLLS GVAYVLPHWR WLQMTVTIPY FLFLAYYWCI PESPRWLITQ NRKAEAKVII 300
  301 HTIAKKNGKT VPDFLESLTA DEEVCEKQVP SFLDLVRTPQ IRKHTLILMY IWFTCAVVYQ 360
  361 GLIMHMGSTG DNIYLDFFIS ALVEFPSAII IIFTVDRVGR RWPWLVGCII TGVACLITTF 420
  421 IPHRLSWLIV TLSCVSRMGI TLSYEMVCLV NAELYPTFIR NLGIMVCSSL CDLGGVITPF 480
  481 IVYRLADIWQ DLPLTVFAVL ATVSGILVYF LPETRGRALP ETIEEAENLH KQVKTTKLAT 540
  541 TYSEVSKVDI