YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148224106, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTQNHRFRD IERAAVYLQP EKCVPPPAQD SMDKVWFIKD GCGIACAVVT WMLVFYAEFV  60
   61 VIFIMLLPSK DIIYSIVNGI VFNMLAFLAL VSHFRAMITD PGAVPKGNAT KEFIESLQLK 120
  121 PGQVVYKCPK CCSIKPDRAH HCSVCKRCIR KMDHHCPWVN NCVGENNQKF FVLFTMYIAL 180
  181 ISLHSLIMVA LHFLYCFEED WTKCSSFSPP TTVILLILLC FEGLLFLIFT AVMFGTQVHS 240
  241 ICTDETGIEQ LKKEERRWAK KTKWMNLKAV FGHPFSIAWL SPLAMPDQGK ADPYQYVV

Type	Start	End	Confidence
Cytoplasmic	1	40	0.95
Transmembrane Helix	41	65	0.84
Non-Cytoplasmic	66	71	0.83
Transmembrane Helix	72	94	0.89
Cytoplasmic	95	172	0.95
Transmembrane Helix	173	195	0.91
Non-Cytoplasmic	196	211	0.88
Transmembrane Helix	212	234	0.89
Cytoplasmic	235	263	0.93
Transmembrane Helix	264	285	0.73
Non-Cytoplasmic	286	298	0.80