YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147900584, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPPGPTAQA SPPGDFTFVS SSGAEDLSGS IAPPDVKLNL GGDFTKESTA TTFLRQRGYG  60
   61 WLLEVEENDP EDNKPLLEEL DIDLKDIYYK IRCVLMPMPS LGFNRQVVRD NPDFWGPLAV 120
  121 VLFFSMISLY GQFRVVSWII TIWIFGSLTI FLLARVFSGE VSYGQVLGVI GYSLLPLIVV 180
  181 APALLLLRPF EIVSTVIKLF GVFWAAYSAA SLLVGEEFKS KKPLLIYPIF LLYIYFLSLY 240
  241 TGV

Type	Start	End	Confidence
Cytoplasmic	1	113	0.94
Transmembrane Helix	114	131	0.91
Non-Cytoplasmic	132	138	0.63
Transmembrane Helix	139	157	0.95
Cytoplasmic	158	165	0.74
Transmembrane Helix	166	187	0.92
Non-Cytoplasmic	188	194	0.74
Transmembrane Helix	195	215	0.93
Cytoplasmic	216	223	0.83
Transmembrane Helix	224	242	0.91
Non-Cytoplasmic	243	243	0.90