YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148234745, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEFNEKKET CGTICLKYLL FTFNFFFWLA GLAVMAVGIW TLIQKSDYIS LLPSNTYAAT  60
   61 AYILVIAGAI VMVTGILGCC ATFKERKSLL KVYFILLLCI FILEVLAGIL AYIYYQQLNT 120
  121 ELKQSLKQTM TTKYKQPGEE KVTNAVDKLQ QEFKCCGSNN SDDWRDSMWI NSPEAEKRLV 180
  181 PDSCCKTVTQ RCGVRDHPSN IYKVEGGCIT KLESFIRAHL LIIGAVGIGI ACVQLFGMIF 240
  241 TCCLYRSLKS EPY

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	43	0.90
Non-Cytoplasmic	44	58	0.94
Transmembrane Helix	59	81	0.93
Cytoplasmic	82	91	0.84
Transmembrane Helix	92	115	0.92
Non-Cytoplasmic	116	219	0.99
Transmembrane Helix	220	244	0.88
Cytoplasmic	245	253	0.90