YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50924892, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMGLEILGV ALSIVGWIGS VVCCALPMWR VTAFIGNNIV VAQTIWEGLW MNCVVQSTGQ  60
   61 MQCKVYDSLL ALPQDLQAAR ALIVISIVIA VLGVLISIIG AKCTNCVQDE SAKAKIMIVS 120
  121 GVIFILAGLM TLIPVSWSAN TIIRDFYNPL VVDAQKRELG SSMYLGWAAS ALLMLGGAML 180
  181 CCSCPPKDKY PPSRVAYTAA RSTNPGYDKK DYV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.89
Transmembrane Helix	7	29	0.91
Non-Cytoplasmic	30	77	0.91
Transmembrane Helix	78	101	0.90
Cytoplasmic	102	115	0.88
Transmembrane Helix	116	137	0.91
Non-Cytoplasmic	138	163	0.91
Transmembrane Helix	164	184	0.93
Cytoplasmic	185	213	0.96