YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50415160, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIWVVLLSR IIMKEKQTTK VYMSLMPIIG GVLLATVTEI SFDMWGLISA LAATLCFSLQ  60
   61 NIFSKKVLRD SRIHHLRLLN LLGCHAIFFM IPTWVLLDLS SFLVESDLSS ASQWPWTLLL 120
  121 LVISGTCNFA QNLIAFSILN LISPLSYSVA NATKRIMVIT VSLIMLRNPV TGTNILGMMT 180
  181 AILGVFLYNK AKYDANQEAK KQLLPLTSGE LQDHHRGPPE KLQNGMANFS PGRDYQYGRT 240
  241 NVLTDHFQYT RQSHPTAHNR YDI

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	38	0.97
Non-Cytoplasmic	39	44	0.75
Transmembrane Helix	45	64	0.94
Cytoplasmic	65	75	0.90
Transmembrane Helix	76	97	0.89
Non-Cytoplasmic	98	115	0.88
Transmembrane Helix	116	139	0.83
Cytoplasmic	140	162	0.66
Transmembrane Helix	163	188	0.62
Non-Cytoplasmic	189	263	0.55