YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52345506, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.99
Transmembrane Helix	32	54	0.94
Non-Cytoplasmic	55	74	0.93
Transmembrane Helix	75	97	0.86
Cytoplasmic	98	114	0.87
Transmembrane Helix	115	135	0.90
Non-Cytoplasmic	136	142	0.81
Transmembrane Helix	143	165	0.93
Cytoplasmic	166	172	0.90
Transmembrane Helix	173	193	0.90
Non-Cytoplasmic	194	205	0.73
Transmembrane Helix	206	222	0.55
Cytoplasmic	223	240	0.56
Transmembrane Helix	241	261	0.91
Non-Cytoplasmic	262	282	0.59
Transmembrane Helix	283	304	0.79
Cytoplasmic	305	315	0.46
Transmembrane Helix	316	330	0.48
Non-Cytoplasmic	331	359	0.76
Transmembrane Helix	360	380	0.84
Cytoplasmic	381	412	0.96
Transmembrane Helix	413	434	0.83
Non-Cytoplasmic	435	439	0.58
Transmembrane Helix	440	458	0.84
Cytoplasmic	459	476	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIKFLEVIK PFCAILPEIQ KPERKIQFKE KVLWTAITLF IFLVCCQIPL FGIMSSDSAD  60
   61 PFYWMRVILA SNRGTLMELG ISPIVTSGLI MQLLAGAKII EVGDTPKDRA LFNGAQKLFG 120
  121 MIITIGQAIV YVMTGMYGDP SEMGAGICLL ITIQLFVAGL IVLLLDELLQ KGYGLGSGIS 180
  181 LFIATNICET IVWKAFSPTT VNTGRGTEFE GAIIALFHLL ATRTDKVRAL REAFYRQNLP 240
  241 NLMNLIATIF VFAVVIYFQG FRVDLPIKSA RYRGQYNTYP IKLFYTSNIP IILQSALVSN 300
  301 LYVISQMLSA RFSGNLLVNL LGTWSDATTG GPARAYPVGG LCYYLSPPES FGSVLDDPVH 360
  361 AVVYIVFMLG SCAFFSKTWI EVSGSSAKDV AKQLKEQQMV MRGHRETSMV HELNRYIPTA 420
  421 AAFGGLCIGA LSVLADFLGA IGSGTGILLA VTIIYQYFEI FVKEQSEVGS MGALLF