YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52345956, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIANDPRLRR QRLKRPPPAR SSSKCARLCK CESIMVAFKG VWTHPFWKAV SAEFLVMLIF  60
   61 VLLSLGSTIN WGGSEKPLPV DMVLISLCFG LSIATMVQCF GHISGGHINP AVTVAMVCTR 120
  121 KISLAKSVFY ILAQCLGAIV GAGILYLITP PSVVGGLGVT AVHGDLSAGH GLLVELIITF 180
  181 QLVFTIFASC DSKRSDVTGS VALAIGFSVA IGHLFAINYT GASMNPARSF GPAVIMGKWE 240
  241 NQWVYWVGPI IGAVLAGALY EYVYCPDVEL KRRFKDVFSK ATQPSKGKYI EVDDTRSHVE 300
  301 TDDLILKPGI VHVIDIDRSE DKKGRDPSSE VLSSV

Type	Start	End	Confidence
Cytoplasmic	1	48	0.90
Transmembrane Helix	49	69	0.87
Non-Cytoplasmic	70	81	0.73
Transmembrane Helix	82	106	0.83
Cytoplasmic	107	127	0.84
Transmembrane Helix	128	149	0.94
Non-Cytoplasmic	150	167	0.90
Transmembrane Helix	168	188	0.94
Cytoplasmic	189	196	0.86
Transmembrane Helix	197	217	0.92
Non-Cytoplasmic	218	242	0.90
Transmembrane Helix	243	264	0.94
Cytoplasmic	265	335	0.99