YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27355754, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIATTRGTT SRAMSLPNIL TYGRIAAIPV VVGCIYAQSI LDQPLWLRWV AVAIFIAAAV  60
   61 TDYLDGYYAR IWNQQSAFGR MLDPIADKLL VASCLLMLAA DGIIHGWSLW AAIVILCREI 120
  121 LVSGLREYLA ALRVSVPVTK LAKWKTTVQL VAIGFLLAGE AGDQVVPVVT QIGLLLLWAS 180
  181 AILTMYTGYD YFRSGIHHLI KEDEV

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	40	0.94
Non-Cytoplasmic	41	45	0.83
Transmembrane Helix	46	67	0.88
Cytoplasmic	68	84	0.83
Transmembrane Helix	85	104	0.84
Non-Cytoplasmic	105	108	0.54
Transmembrane Helix	109	130	0.58
Cytoplasmic	131	140	0.64
Transmembrane Helix	141	159	0.60
Non-Cytoplasmic	160	167	0.68
Transmembrane Helix	168	189	0.87
Cytoplasmic	190	205	0.88