YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KDPA_BRADU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.68
Transmembrane Helix	6	25	0.94
Cytoplasmic	26	62	0.77
Transmembrane Helix	63	85	0.91
Non-Cytoplasmic	86	136	0.92
Transmembrane Helix	137	159	0.87
Cytoplasmic	160	176	0.87
Transmembrane Helix	177	198	0.88
Non-Cytoplasmic	199	254	0.87
Transmembrane Helix	255	275	0.91
Cytoplasmic	276	283	0.72
Transmembrane Helix	284	305	0.94
Non-Cytoplasmic	306	327	0.75
Transmembrane Helix	328	350	0.85
Cytoplasmic	351	356	0.60
Transmembrane Helix	357	376	0.71
Non-Cytoplasmic	377	380	0.63
Transmembrane Helix	381	402	0.90
Cytoplasmic	403	421	0.86
Transmembrane Helix	422	445	0.89
Non-Cytoplasmic	446	485	0.65
Transmembrane Helix	486	512	0.76
Cytoplasmic	513	525	0.44
Transmembrane Helix	526	552	0.84
Non-Cytoplasmic	553	567	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMIGWLQII LFCVIIVALT KPLGWYMTRV FNGERTFLSP VLRPIEAGIY WISGVDERRE  60
   61 QHWLTYTVAM LLFHVGGFLV IYGVMRLQAV LPFNPAGQSA VAQDLSFNTA ISFITNTNWQ 120
  121 NYGGESTLSY LVQMLGLTHQ NFLSAATGIA LAMALIRGFS RASVRTVGNF WVDVTRCTLY 180
  181 VLLPICVVYT LFLVWQGIPQ TLGDYVEATT LEGAKQTIAV GPVASQVAIK MLGTNGGGFF 240
  241 NANAAHPFEN PTALSNFVQM LSIFALGAAL TNVFGRMVGN QRQGWAILAV MGVLFVAGVA 300
  301 VTYWAEANGT STMHALGLTG GNMEGKEVRF GLVASSLFAV ITTAASCGAV NAMHDSFTAL 360
  361 GGMIPLINMQ LGEIIVGGVG AGLYGMLLFV VLAIFVAGLM VGRTPEYVGK KIEAREVKMA 420
  421 MLAILVLPLM YLGWTAVGVV YPAAVASMAN AGPHGFTEVL YAFTSATGNN GSAFAGLTGN 480
  481 TLFYNLTLAS AMFVGRFFMI VPAMAIAGSL AAKKSIPPSA GTFPTTGGLF VGLVVGVILI 540
  541 IGGLTFFPAL ALGPIVEHLA MNAGQVF