YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27352011, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPLLALSNA IDALNEKIGY VCNLLVLLAC LVSAANAMIR YAFNDSSNGW LELQWYMFAI  60
   61 LVMFGSAYTF KRNEHVRVEI FYLTLSERGQ LWLDMIGTLF FLIPSCLLLA YLSWPFFMQA 120
  121 YSVGETSANA GGLIRWPIKF VIPAGFVMLA LQGVSEVIKR IAALQGYVTI DAKYERPTQ

Type	Start	End	Confidence
Cytoplasmic	1	19	0.96
Transmembrane Helix	20	42	0.91
Non-Cytoplasmic	43	52	0.85
Transmembrane Helix	53	70	0.97
Cytoplasmic	71	90	0.95
Transmembrane Helix	91	114	0.92
Non-Cytoplasmic	115	135	0.88
Transmembrane Helix	136	154	0.89
Cytoplasmic	155	179	0.91