YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27377623, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSPLPSSS SSSSAAAGQV ADDQVQAVRA FNRFYTHKLG VLDQQLLKSP FSLSEARVLY  60
   61 ELAHGGEQSA KEIGIALGLD AGYLSRIVQN FDESGLIARK PLASDRRQVQ LSLTAKGRQA 120
  121 FAKLERSSQE DVAAMLRPLP DEERRRLTGA METIERLLAL PRAPAPRAIL RDPRPGDMGW 180
  181 VVQSHGALYA GEYGFDSGFE ALVAEIVAKY MTSYDASRER CWIADIEGRP VGSVFLVKAS 240
  241 DDVAKLRLLL LDPAARGQGL GQRLVAECVS FARACGYRRM TLWTQSNLTA ARKIYQDAGF 300
  301 KLVATEPHRS FGQNLVGETW ERDL

Type	Start	End	Confidence
Signal Peptide	1	18	0.89
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	324	0.99