YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27348720, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSPESSHRF LSSCPAQAGH PVRRAAGCRS QVPRNTGSPA FAGDDINESQ GMDKTQPHPL  60
   61 FKLATELGPL LVFFFVNAKF NLFAATGAFM VAIVAAMIAS YVVTRHIPIM AIVTGVIVLV 120
  121 FGTLTLVLHD ETFIKVKPTI IYGLFAAILG GGLLFGRSFI AVMFDQMFNL TPQGWRILTL 180
  181 RWALFFAGMA VLNEIVWRTQ STDFWVNFKV FGVTPITMIF AIAQMPLTKR YHLEPVSLEA 240
  241 SEADAGDVRK G

Type	Start	End	Confidence
Cytoplasmic	1	79	0.88
Transmembrane Helix	80	101	0.90
Non-Cytoplasmic	102	106	0.69
Transmembrane Helix	107	128	0.93
Cytoplasmic	129	138	0.78
Transmembrane Helix	139	161	0.92
Non-Cytoplasmic	162	176	0.79
Transmembrane Helix	177	197	0.91
Cytoplasmic	198	204	0.79
Transmembrane Helix	205	227	0.85
Non-Cytoplasmic	228	251	0.81