YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|147900610, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRPQAWWSS VRSAFQRSDQ PPYLNDATGF DCTDEPALEG EEVLPRFNKL RVLVADEAVA  60
   61 TNGVTLNAAS DDDSLLESRA KSEPCEKCNS HREKRKQSKV KRKLILAAAL YLLFMVGELV 120
  121 GGYVANSLAI MTDALHMLSD LSSIILTLLA LCLSSKSPNK RFTFGFHRLE VLSAIVSVLL 180
  181 VYILTGFLLY EAIQRTIHMN YNINGDVMLI TAAVGVAVNL VMGILLSQTG HPHSHSHGPT 240
  241 ANLPSPHGHS HGSLAVRAAF VHALGDLAQS IGVLIAAYII RFKPEYKIAD PICTYIFSVL 300
  301 VVFTTVRLVW DTVLIILEGA PRNLNLDRLK EDLMKIDDVY SVKDLNVWSL TTGKSVAIIH 360
  361 LQLCPDASSK WEEVQNKARH VLLNTHGMYK CFIQLQNYRQ EERTHCTDCS SA

Type	Start	End	Confidence
Cytoplasmic	1	103	0.99
Transmembrane Helix	104	125	0.93
Non-Cytoplasmic	126	133	0.81
Transmembrane Helix	134	154	0.84
Cytoplasmic	155	170	0.72
Transmembrane Helix	171	190	0.91
Non-Cytoplasmic	191	206	0.80
Transmembrane Helix	207	227	0.92
Cytoplasmic	228	258	0.83
Transmembrane Helix	259	280	0.80
Non-Cytoplasmic	281	290	0.60
Transmembrane Helix	291	310	0.78
Cytoplasmic	311	412	0.78