YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|40287458
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.96
Transmembrane Helix	61	79	0.87
Non-Cytoplasmic	80	95	0.82
Transmembrane Helix	96	117	0.90
Cytoplasmic	118	140	0.88
Transmembrane Helix	141	161	0.76
Non-Cytoplasmic	162	173	0.67
Transmembrane Helix	174	193	0.93
Cytoplasmic	194	202	0.82
Transmembrane Helix	203	222	0.94
Non-Cytoplasmic	223	249	0.83
Transmembrane Helix	250	270	0.84
Cytoplasmic	271	288	0.97
Transmembrane Helix	289	313	0.88
Non-Cytoplasmic	314	363	0.89
Transmembrane Helix	364	385	0.80
Cytoplasmic	386	405	0.92
Transmembrane Helix	406	426	0.91
Non-Cytoplasmic	427	441	0.89
Transmembrane Helix	442	461	0.88
Cytoplasmic	462	471	0.64
Transmembrane Helix	472	491	0.92
Non-Cytoplasmic	492	499	0.64
Transmembrane Helix	500	525	0.80
Cytoplasmic	526	554	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAEQDGDLL EEDSPQDNGV QTNQYSSISP PASPVAQDEP FSTYFEEKVH IPENVSQVFS  60
   61 FRKLWAFTGP GFLMSIAYLD PGNIESDLQS GAKAGFKLLW VLLGATIIGL LLQRLAARRR 120
  121 VVTGMHLAEV CNRQYPTVPR IILWLMVELA IIGSDMQEVI GCAIALNLLS VGRIPLWAGV 180
  181 LITITDTFVF LFLDKYGLRK LEAFFGFLIT VMAISFGYEY VLVKPNQAEL LKGMFLPYCA 240
  241 GCGPLQLEQA VGIVGAVIMP HNIYLHSALV KSREIDRKNK KEVKEANKYF FIESTIALFI 300
  301 SFLINVFVVA VFAQAFYNKT NADVNESCNK TGSPHTDLFP LNNKTLEVDI YKGGVVLGCV 360
  361 FGPAALYILA IGILAAGQSS TMTGTYSGQF AMEGFLNLRW SRFARVLLNR SIGITPTLLV 420
  421 AIFQDVQHLT GINDFLNVLQ NMQLPFALIP ILTFTSLTSI MNDFANGLVW KISGGIVILV 480
  481 VCAINMYFVV VYVTALNSVL LYVLAALLSV AYLCFVGYLA WHCLVALGVS CLDFGSRVSN 540
  541 RPAVLIEEPS EYDS