YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ANKHB_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	10	0.70
Transmembrane Helix	11	30	0.63
Non-Cytoplasmic	31	47	0.44
Transmembrane Helix	48	64	0.39
Cytoplasmic	65	85	0.82
Transmembrane Helix	86	105	0.94
Non-Cytoplasmic	106	130	0.86
Transmembrane Helix	131	152	0.87
Cytoplasmic	153	158	0.83
Transmembrane Helix	159	181	0.91
Non-Cytoplasmic	182	189	0.75
Transmembrane Helix	190	213	0.83
Cytoplasmic	214	326	0.90
Transmembrane Helix	327	348	0.92
Non-Cytoplasmic	349	361	0.89
Transmembrane Helix	362	387	0.74
Cytoplasmic	388	402	0.74
Transmembrane Helix	403	423	0.87
Non-Cytoplasmic	424	429	0.72
Transmembrane Helix	430	452	0.90
Cytoplasmic	453	501	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKFPALTHY WPLIRFLVPL AITNIAIDLG EQALNRGIAA VKEDAVEMLA SYGLAYSLMK  60
   61 FFTGPMSDFK NVGLVFVNSK RDRTKAVLCM VVAGTVAIVF HTLIAYTNLG YYIINKLHHV 120
  121 DESVGSKTRK AFLYLAAFPL LDAMAWTHAG ILLKHKHSLL VGCASISDVV AQIVFVGILL 180
  181 HSHLECVEPM LIPILSLYMG ALVRFTIVGL GYYKVIHDNI PESSGPEVGG DATIKKMLSF 240
  241 WWPLALILAT QRISRPIVNL FVSRDLKGST AATEAVAVLT ATYPVGHMPY GWLTELRAVY 300
  301 PAFDKNNPSN KLINSGTVVT KSHIKRFTFF CLALSITLCF MVFWAPHISE SILVDIIGVD 360
  361 HAFAELCITP LRIFSFFPIP VTIRAHLTGW LMTLKKTFVL APSSVLRIIV LISSLIVLPY 420
  421 MGVHGATLGV GSLLAGFLGE STMVAIAACY VYRKQKKKKD SDEDMTIDGE DSAPMNEVRS 480
  481 RGRMDDIVEL REEDEEELDE D