YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51859104
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRSRSRKLH CTRNYIHGNL FASFVLKAGS VLVIDWLLKT RYSQKIGDDL SVSVWLSDGA  60
   61 VAGCRVATVI MQYGIIANYC WLLVEGVYLY SLLSITTFSE KSFFSLYLCI GWGSPLLFVI 120
  121 PWVVVKCLFE NVQCWTSNDN MGFWWILRIP VLLAILINFF IFVRIIHLLV AKLRAHQMHY 180
  181 ADYKFRLARS TLTLIPLLGV HEVVFAFVTD EHAQGTLRST KLFFDLFFSS FQGLLVAVLY 240
  241 CFLNKEVQAE LLRRWRRWQE GKALQEERMA SSHGSHMAPA GTCHGDPCEK LQLMSAGSSS 300
  301 GTGCEPSAKT SLASSLPRLA DSPT

Type	Start	End	Confidence
Cytoplasmic	1	14	0.94
Transmembrane Helix	15	38	0.84
Non-Cytoplasmic	39	68	0.86
Transmembrane Helix	69	92	0.73
Cytoplasmic	93	102	0.84
Transmembrane Helix	103	125	0.92
Non-Cytoplasmic	126	144	0.94
Transmembrane Helix	145	168	0.91
Cytoplasmic	169	186	0.93
Transmembrane Helix	187	208	0.88
Non-Cytoplasmic	209	222	0.90
Transmembrane Helix	223	244	0.89
Cytoplasmic	245	324	0.96