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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|149063408, gi...
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVAASASRS ASTLCSPQIQ QGALKEAKVP PHIWAARHWN LGLRLVPGHA SVRAGILVLL  60
   61 IFLPSTLCDL GSVYDSSYET VIPERLPGQG SDDPGGKVSY VLLMQGQKQL LHLEVKGHYS 120
  121 ERNFPVYSYH HGILGQEVPL LSQACHYEGH IEGVPGSFVS VSICSGLRGV LIKEETAYGI 180
  181 EPLLFSTDFE HILYTMAHQP VVLCNVTPTD SLGDSSQRQG SSKTDELLAL SDLWSHAKYV 240
  241 EMFVVVNHQR FQMWGSDVNT TVQAVVDIIA LANSFTRGIN TEVVLVGLEI WTEGDPIEVP 300
  301 VDLQATLRNF NLWRQEKLMG RVRHDVAHLI VGHRPGANEG QAFLDGACSG GFAAAVEAFH 360
  361 HEDVLLFAAL MAHELGHNLG IRHDRPGCTC GPKHLCLMHE TISKTSSFSN CSSDHFLRFL 420
  421 HDHRGACLLD RPWHQSHKRR DAHCGNGVVE ESEECDCGNA CDSHPCCEPT CTLKVGAQCS 480
  481 EGLCCYKCTF KKKGTLCRPA EDVCDLPEYC NGITGECPAN SYMQDGTQCD RIYYCSGGLC 540
  541 KNPDKQCARI YGYPARSAPE ECYISVNTKA NRFGNCGHPT SANLKYEACS NEDIFCGKLV 600
  601 CTDVRYLPQV KPLHSLLQIP YGDDWCWSMD AYNVTDIPDY GDVQGGTYCA PKKVCMESIC 660
  661 TGHATLQYDC HPQEMCHGNG VCNNFKHCHC DAGFSPPDCS SGGNGGSVDS GPVGKPADRN 720
  721 LSLFGVGESP DSRMEDEEIN LKVVVLVVPI FLIVLLCCLM LIAYLWSEVQ EAVSPGSSST 780
  781 TSSSESESD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle