YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51858578
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	49	0.64
Transmembrane Helix	50	72	0.90
Cytoplasmic	73	92	0.56
Transmembrane Helix	93	114	0.79
Non-Cytoplasmic	115	200	0.48
Transmembrane Helix	201	224	0.87
Cytoplasmic	225	233	0.43
Transmembrane Helix	234	255	0.72
Non-Cytoplasmic	256	281	0.66
Transmembrane Helix	282	302	0.93
Cytoplasmic	303	322	0.58
Transmembrane Helix	323	344	0.84
Non-Cytoplasmic	345	394	0.64
Transmembrane Helix	395	415	0.88
Cytoplasmic	416	422	0.53
Transmembrane Helix	423	446	0.80
Non-Cytoplasmic	447	461	0.63
Transmembrane Helix	462	484	0.84
Cytoplasmic	485	492	0.45
Transmembrane Helix	493	511	0.73
Non-Cytoplasmic	512	687	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEELVGLREG SSGKPVTLQE LWGPCPRIRR GVRRGLEWLK ERLFRVGEDW HFLVALGVLM  60
   61 ALISYAMNFA IGRVVRAHKW LYREVGDGHL LRYLSWTVYP VALLSFSSGF SQSISPFSGG 120
  121 SGLPELKTML SGVVLEDYLD IKNFGAKVVG LSCTLATGST IFLGKVGPFV HLSVMISAYL 180
  181 GRVRAKTIGE TENKAKEIEM LSAAAAVGVA TVFAAPFSGV LFSIEVMSSH FSVWNYWRGF 240
  241 FAATCGAFMF RLLGVFNSEQ ETITSIYKTR FRVDVPFDLP EIFFFVALGF ICGVLSCAYL 300
  301 FCQRTFLCFI KTNRYTSRLL ATSKPSYAAL VALVLASITY PPGVGRFMAS RLSMAEHLHS 360
  361 LFDNNSWALM TRNSSPPWPA EPDPQNLWLE WCHPRFTIFG TLAFFLVMKF WMLILATTIP 420
  421 MPAGYFMPIF IIGAAIGRLL GEALSVAFPE GIVAGREVNP IMPGGYALAG AAAFSGAVTH 480
  481 TISTALLAFE LTGQIVHALP VLMAVLAANA ISQNCQPSFY DGTIMAKKLP YLPWIRGRQI 540
  541 GSYPVTVEHF MNCNLTTLAK DTPLEEVVKV VTSTEVSQYP LVETRESQTL VGIVERTHLV 600
  601 QALQTQPASW APGQERFLQD ILAGGCPTQP VTLQLSPETS LYQAHSLFER LTLQSLFVTS 660
  661 RGKAVGSVSW AELKKAISTL INPPAPK