YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	acl-11
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.42
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLISLTIAVD ALRPIIPCSL LSLSMVPFAS CAIVIGGVSW IVPRHVAQQL DNMLYKSYMR  60
   61 LCLFVFENLS GVEIYLHGTN EEVVNKTGKP ENAVMISNHQ SNVDWIIPVM LAARHGDQGN 120
  121 EQAFRVMVKN SIHLVPMFGW YIFQHGYIYV RRFGEFIGAP VLRQLKWLNE SDPPYWLLIF 180
  181 PEGTRNSAKK KHLLESSNRF LEKSGRQPMQ NVLCPRSGGL QLALDNLSTL DAIYDVTVMY 240
  241 GQMRMAERRG LAPGMFDFCC GSQQFKQLHI HLDRIPIDEV PKAKLELRTW TIERFTKKER 300
  301 IIDEFYSEKP STGSALPCVP ISQTLPSTLF FSAALLAPFF SRTIGRIYLL TIASSPLLIA 360
  361 WLHIRKCV

Type	Start	End	Confidence
Signal Peptide	1	31	0.47
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	343	0.80
Transmembrane Helix	344	364	0.74
Cytoplasmic	365	368	0.62