YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37368
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	48	0.89
N-region	1	39
H-region	40	45
C-region	46	48
Cleavage Site	48	49
Non-Cytoplasmic	49	1493	0.99
Transmembrane Helix	1494	1514	0.95
Cytoplasmic	1515	1534	0.91
Transmembrane Helix	1535	1556	0.92
Non-Cytoplasmic	1557	1572	0.88
Transmembrane Helix	1573	1595	0.88
Cytoplasmic	1596	1607	0.82
Transmembrane Helix	1608	1633	0.83
Non-Cytoplasmic	1634	1658	0.87
Transmembrane Helix	1659	1680	0.94
Cytoplasmic	1681	1701	0.90
Transmembrane Helix	1702	1727	0.80
Non-Cytoplasmic	1728	1736	0.76
Transmembrane Helix	1737	1756	0.97
Cytoplasmic	1757	1788	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVGKSNTCL PNMSGFCHNI KRKILKKILN GMRSTLLSIL LISSSVTAQN LGFTVTLTEQ  60
   61 PSELDNFNQK YIVFFVNLEC GADNCAYQIT INNYAWNVFK VLINNKQCLA ESCVDSFERG 120
  121 NNVNVTVHNA INGNVLRIFD LEFKQDPNVV LLGCETGFFN DGTCTRITDT AEDQWDQVCF 180
  181 CANSQSSYCS ADQSIKGECA SGTVTWWNAA TGTTDKTTSV AAGGTTNTPK PFTFLLEDVN 240
  241 ISLKEGKTKG GSTKDVILSA HLSCEGESCE FTSTISNYAP DYYTIHIGTL ACQLGTCSGN 300
  301 FVKGEIVPIL VRRGDQHLNM FSYQWIDEKP EISILGCNAG LLLFDTCLRT VTNPVIDFEY 360
  361 YDDTVCSCQG NQVTCDYQTQ IGNCIGGTPT WWIDDTTSTS LVPAVHTTTA YPVRDPNVFD 420
  421 VTFLLSEGVI YDDPHNDHNV TITAFMNCTT TTTCQYSIAV VDYAQVYYTI LVNGVECPGS 480
  481 VCSSTFAQGE TVRVTVTRLG EQLDLFDLQN DYMPNIVVLG CSFGMVNFGI CEKANYYDNI 540
  541 IQRDDNVCIC QGTSMKCDAD TRTGGCSDGS PTWWKPIDPR NTASSPSTTD GYYLMTFDTN 600
  601 FSEITLAGTI YQLSINTYLL CNDRTCTYQL KVSNDNSEYF GVYVNNQICQ QTCESSFTNQ 660
  661 EGAHVYIRKS NEILDLIQLN YKSVTMVYCD DGWLEPGKCI KTSNDMDTLC TCQGTNVTCN 720
  721 QISMLSPCSF GNPIWWQPIG LPTITTASPI IETDVEMTFT EELTNQNAHN DNFTVSTKMS 780
  781 CQRTICHYEV LTYTGSPDYF TFQMNGDPCI NSCKGVLNRG ELDDMLTVHR LGQHLNLIEF 840
  841 QFSDTPKLIM VGCEVMHKIG SADDSTCLQY PTNSNVGQTY FNDNLCVCKG NANLCDDNVP 900
  901 QGICTLGSLI WWQDDEANST STVNSTTITS TTITSTTVTT SSPSTSTVTT TTPPSTTTQD 960
  961 DVRNHFLFDI SLVEGKNNSM KEVKFTSIMT CSPEECEYSI KVDNSAQSYF DVMVGNLKCK1020
 1021 NKKCDGSFMK GQSINVTIYR GEQVLDLFDF EYTDIPRIVV LGCEDGLSEY HDCISTTTAL1080
 1081 DQDLIDSVCS CRSARLNCTG ASDGVCRQGS QKWWKELDET TIPTTQTTST PVPTTSFPSL1140
 1141 KDISDTGVGL NNVTRVLNET YHYSSEGENL NRTQIRDITK ILHNSANLAG ISAENAQQIL1200
 1201 ANMDQVLNAH RREIRNGQSK DYRLLALLRP MVMNTKDHFV QYLNGRNLGF NAKKVDCKSI1260
 1261 TTDDGLIDYG PDFGFAPLND TNRLTATKEN SIIVPLDQVC SGSGEQVSHV FFTIYRHQKL1320
 1321 FSGPQKYRNY GSSSEEDDEE EDDPAMEEAG ARYKRDTGNN NTDDIGQIPA PSKCSEQISI1380
 1381 PFGTPVLSAS IIGGDQGAFI SRMSKLVGAA PVMAKLQFNV GQMSRPLHGN TIVSWFNTGT1440
 1441 QEWELQQKCD TEVGSDGIVT ASCEHLTDFS VLVYSQPNAE YVCSMPLTII GYSVNGASIV1500
 1501 CLLLLILIGL MFYIRGELVR RVLIYIRGQA PTTGDVVNLA YYCVFFLFFI LSLFFMDQSG1560
 1561 GDDRSMGTST YCVVIAAMSY FSLISAIMMS MLIGLRMVCH FFSPKLRLFF GVMTSPPAAL1620
 1621 SIGLIVPFTF TLILALVDTS FFKRDDCFCW VRPDYIVYAV VIPVVLPIIN GVICSSFAIY1680
 1681 KMFFQAKRGL ASKETSHYDA EFWSKVMGLI IMQVAMGLPW GIEFILIGVA GPSPWNYIFV1740
 1741 LLLGTQGIDL FLIFLYRRQR LRNESRKWSS REEKWETKRS RAAEADED