YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE37397
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTSLLFPFH FISSRLDTFN QDMLERVKAS TSRISSATRS PCFQRWSPVL LILLTTVFIL  60
   61 FGATCFYLFE RDPHEMTVRK WYMNLAVERR QFARTISSRI FNDTRNLLII IDREQTERVQ 120
  121 QLLVESLKRY EDKLTIVPPS RREWSWISSF NFAYSLLLTI GGGFKVPATV GSQIFAVFYC 180
  181 LIGIPLFYST LILIVCRLVS PVLKWPSLTR SRRFLLILAA FGLFILWAIL IGLCLYYQVI 240
  241 NDFWLSILHA FTGSLTVQIP SPAQITTCGI LFLNFAATIS VSLLILILLV SFSVFFPKEM 300
  301 LIQEVDNGVE EKLERLTPPP KFQVIVDEAG ESKLTSA

Type	Start	End	Confidence
Non-Cytoplasmic	1	48	0.94
Transmembrane Helix	49	69	0.95
Cytoplasmic	70	145	0.96
Transmembrane Helix	146	168	0.84
Non-Cytoplasmic	169	174	0.81
Transmembrane Helix	175	196	0.94
Cytoplasmic	197	213	0.89
Transmembrane Helix	214	237	0.92
Non-Cytoplasmic	238	269	0.64
Transmembrane Helix	270	295	0.85
Cytoplasmic	296	337	0.64