YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17549897
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.56
Transmembrane Helix	21	42	0.82
Non-Cytoplasmic	43	48	0.39
Transmembrane Helix	49	71	0.85
Cytoplasmic	72	72	0.34
Transmembrane Helix	73	89	0.52
Non-Cytoplasmic	90	96	0.71
Transmembrane Helix	97	119	0.89
Cytoplasmic	120	132	0.85
Transmembrane Helix	133	155	0.88
Non-Cytoplasmic	156	168	0.79
Transmembrane Helix	169	187	0.93
Cytoplasmic	188	194	0.80
Transmembrane Helix	195	217	0.90
Non-Cytoplasmic	218	236	0.87
Transmembrane Helix	237	262	0.78
Cytoplasmic	263	282	0.87
Transmembrane Helix	283	305	0.61
Non-Cytoplasmic	306	316	0.55
Transmembrane Helix	317	341	0.80
Cytoplasmic	342	342	0.26
Transmembrane Helix	343	362	0.48
Non-Cytoplasmic	363	375	0.63
Transmembrane Helix	376	402	0.76
Cytoplasmic	403	411	0.56
Transmembrane Helix	412	430	0.93
Non-Cytoplasmic	431	434	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWLARFFKL EEHQTDVRTE VVAGLTTFLT MAYIVFVNPN ILADAGVPHD AVFVATCVAA  60
   61 AIGTAIMGLY ANYPIAMAPG MGLNAYFAYS VVKGMGFTWQ AALGAVFVSG CLFMLVSLFR 120
  121 IREMIINGIP HSIRIAITAG IGLFLGIVSL RGAGLVVGNP ATLVALGDVH QPSVILAVIG 180
  181 FFLIVTLDHL RVKGAILIGI LAVTVASFFV AGNTFHGVVS MPPPIAPTLL QLDIQGALSV 240
  241 GILNVVLVFF LVELFDATGT LMGVANRAGL LKAGRMDRLN KALLADSTAI VAGSMLGTSS 300
  301 TTAYIESAAG VQAGGRTGLT ALTVAVLFLA CLFIAPLAGV VPAYATAPAL LYVSCLMLRE 360
  361 LVELDWADTT ESVPAVLTAL MMPFTYSIAN GVAFGFVTYS GLKLFGGRWR EVPAVVWIIS 420
  421 LIFLFRFFYL QAGH