YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17549630
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVAIGYIVI LASVFGGYML AGGHLGPLFQ PTELLIIFGA GVGAFVVGND KKAINATVKS  60
   61 LPGLFKGSKY TKALYMEVMA LLYVMLSKIR REGMMSIEAD IESPHESALF SNYPAIQADH 120
  121 HALDFICDYL RLMVGGNLNP FQIEALMDQE IDTHHHEAEQ PARIITKVGD AMPAFGIVAA 180
  181 VMGVVHTMGS VGLPPAELGK LIASALVGTF LGILLAYGFI GPLGSLLEQR AEESTKLFQC 240
  241 IKVTLLASMN GYAPAIAVEF GRKVLFSTER PSFAELEDHV RGAKTA

Type	Start	End	Confidence
Cytoplasmic	1	4	0.81
Transmembrane Helix	5	26	0.86
Non-Cytoplasmic	27	33	0.58
Transmembrane Helix	34	49	0.73
Cytoplasmic	50	170	0.87
Transmembrane Helix	171	190	0.91
Non-Cytoplasmic	191	200	0.73
Transmembrane Helix	201	221	0.93
Cytoplasmic	222	286	0.69