YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KDPA_RALSO
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.71
Transmembrane Helix	8	29	0.81
Cytoplasmic	30	62	0.84
Transmembrane Helix	63	82	0.93
Non-Cytoplasmic	83	134	0.89
Transmembrane Helix	135	157	0.91
Cytoplasmic	158	174	0.89
Transmembrane Helix	175	197	0.86
Non-Cytoplasmic	198	283	0.97
Transmembrane Helix	284	304	0.93
Cytoplasmic	305	311	0.83
Transmembrane Helix	312	332	0.94
Non-Cytoplasmic	333	358	0.92
Transmembrane Helix	359	379	0.90
Cytoplasmic	380	385	0.76
Transmembrane Helix	386	406	0.86
Non-Cytoplasmic	407	411	0.69
Transmembrane Helix	412	431	0.91
Cytoplasmic	432	450	0.85
Transmembrane Helix	451	473	0.91
Non-Cytoplasmic	474	517	0.76
Transmembrane Helix	518	541	0.83
Cytoplasmic	542	555	0.65
Transmembrane Helix	556	579	0.88
Non-Cytoplasmic	580	590	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAFLLQLAI YLAVLLVLAR PLGTYMARVF GDAPSRAHWL RSVERLLYRV AGVDPRAEMG  60
   61 WKHYALAVIA VNVLGALAVY ALQRLQPWLP LNPQGFGAVT PDSSFNTAVS FVTNTNWQGY 120
  121 SGESTMSYLT QMLGLAVQNF LSAATGIAVV IALIRGFARH SARTIGNFWV DFTRGTLYVL 180
  181 LPLSVIVAVF FVSQGAIQNF DAYKEVTTVA ATTYDNPKTD AQGNPIKDAQ GNPVTEKATT 240
  241 QKQTLPMGPI ASQEAIKMLG TNGGGPFNAN SAHPYENPTP LANFVQMLSI FLIPAALCFT 300
  301 FGAMVGDRRQ GWAVLASMTI LFVVLAVFEM WAELHANPML AHLGVDQAVG NMEGKETRFG 360
  361 VVASSLFVTI TTAASCGAVN AMHDSLTALG GFVPMFLIQL GEVVFGGVGS GLYGMLVYAI 420
  421 LAVFIAGLMI GRTPEYLGKK IEVFEMKMTS IAILVTPLLV LVGTAVAVLA SGGRAGIFNP 480
  481 GTHGFSEVLY AFSSAANNNG SAFAGLSANT PFYNVALGIV MWLGRFWIIV PVLAMAGTFA 540
  541 AKKRLPVTVG TLPTHGPLFV VLLIGSVLLV GALTYIPALA LGPIAEHLAR