YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17429559
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.98
Transmembrane Helix	25	48	0.84
Non-Cytoplasmic	49	54	0.75
Transmembrane Helix	55	76	0.90
Cytoplasmic	77	91	0.88
Transmembrane Helix	92	112	0.94
Non-Cytoplasmic	113	120	0.75
Transmembrane Helix	121	143	0.88
Cytoplasmic	144	152	0.79
Transmembrane Helix	153	175	0.90
Non-Cytoplasmic	176	186	0.80
Transmembrane Helix	187	210	0.73
Cytoplasmic	211	225	0.75
Transmembrane Helix	226	245	0.87
Non-Cytoplasmic	246	252	0.82
Transmembrane Helix	253	274	0.94
Cytoplasmic	275	303	0.88
Transmembrane Helix	304	325	0.80
Non-Cytoplasmic	326	358	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACNSGHPLI RSAPWRRKHM KIPFLSRIDG FIRAMLVMVL LALLFPSLGA SAGPLHLDIV  60
   61 TVLGVSLVFF LHGAALSREK IVEGARNWRL HLFVQSCTFV LFPLIGAAIL VACKPFIPAE 120
  121 LLLGVFYLCA LPSTVSSSVA MTAMAKGNVP AAIFNATISG LIGMVATPLL MSFVIQASGA 180
  181 ELPVGKALLG VAEQLLLPFV LGQLLRPAIG GFITRYKAII NKVDRAVILL IVFNSFADST 240
  241 HAGVWSKYPW ETIVAVAIMS GALLFVVLGA TTWIARRFGF GLADEITAVF CGSKKSLANG 300
  301 VPMAKILFAG NPALGLIVLP IMIYHQLQLI VCSTLARRYA DRIAHAEDRA ADRAGQPA