YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17546792
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAFNRRKKR FTASNVMHLR PLRHNQPRSD DDELEVVRPR RRGIYLLPNA FTTAALFAGF  60
   61 FAIVQAMNLN FETAAIAIFA AMVLDGMDGR VARITNTQSA FGEQYDSLSD MCSFGVAPAL 120
  121 VMYEWILRDL GKWGWLAAFV YCAGAALRLA RFNTNIGVVD KRFFQGMPSP AAAALIAGFV 180
  181 WLAIDNKLPV KELWMPWVAF GLTLYAGLSM VSNAPFYSGK ALDVRHRVPF GVMVLVLVLF 240
  241 VVVSSDPPVA LFGLFVVYAV SGYVLWGWRA LHGRPGSPRL PREPVPADAD E

Type	Start	End	Confidence
Cytoplasmic	1	43	0.99
Transmembrane Helix	44	64	0.93
Non-Cytoplasmic	65	72	0.70
Transmembrane Helix	73	92	0.72
Cytoplasmic	93	106	0.72
Transmembrane Helix	107	127	0.72
Non-Cytoplasmic	128	132	0.85
Transmembrane Helix	133	152	0.93
Cytoplasmic	153	162	0.92
Transmembrane Helix	163	184	0.93
Non-Cytoplasmic	185	192	0.93
Transmembrane Helix	193	217	0.85
Cytoplasmic	218	225	0.84
Transmembrane Helix	226	244	0.93
Non-Cytoplasmic	245	249	0.80
Transmembrane Helix	250	270	0.92
Cytoplasmic	271	291	0.94