YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19173236
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYCFGKCFE ESRGLVKTGL VDWVFGRDAD EKAGNMCHLL CLKFTNSGNI KRNGRWGFQP  60
   61 ILGMTEFFSA LFSFMNLITN IICFHRMLKK HLRVTRLGRL YYIQYYICNL AFISSTLFHI 120
  121 HENTFTRNCD YFLAFLTILF GFYMALVRVI LIVSPSIEKA TRGPLQAIFI LFYAYHIHRM 180
  181 SNIEFDYVYN KISCAIIVTL TLLSHLVTFL KYRKLAHTKH ILFFTFFFFL AGAIEIQDVP 240
  241 PYAYLVDSHA IWHLISCIST PFYLLFWSGD VYMH

Type	Start	End	Confidence
Non-Cytoplasmic	1	63	0.96
Transmembrane Helix	64	84	0.89
Cytoplasmic	85	100	0.87
Transmembrane Helix	101	121	0.93
Non-Cytoplasmic	122	130	0.90
Transmembrane Helix	131	152	0.94
Cytoplasmic	153	159	0.93
Transmembrane Helix	160	179	0.87
Non-Cytoplasmic	180	186	0.91
Transmembrane Helix	187	209	0.89
Cytoplasmic	210	219	0.78
Transmembrane Helix	220	237	0.93
Non-Cytoplasmic	238	248	0.81
Transmembrane Helix	249	269	0.92
Cytoplasmic	270	274	0.84